Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIQ49659.1 | rplM | SAMN05421821_102604 | SAMN05421821_102603 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| SIQ49659.1 | rplT | SAMN05421821_102604 | SAMN05421821_10117 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| SIQ49659.1 | rplU | SAMN05421821_102604 | SAMN05421821_104309 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| SIQ49659.1 | rpmA | SAMN05421821_102604 | SAMN05421821_104308 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| SIQ49659.1 | rpmF | SAMN05421821_102604 | SAMN05421821_106153 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| SIQ49659.1 | rpmI | SAMN05421821_102604 | SAMN05421821_10118 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| SIQ49659.1 | rpsB | SAMN05421821_102604 | SAMN05421821_102605 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| SIQ49659.1 | rpsF | SAMN05421821_102604 | SAMN05421821_11944 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| SIQ49659.1 | rpsT | SAMN05421821_102604 | SAMN05421821_109168 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.999 |
| SIQ49659.1 | rpsU | SAMN05421821_102604 | SAMN05421821_109185 | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.998 |
| rplM | SIQ49659.1 | SAMN05421821_102603 | SAMN05421821_102604 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplM | rplT | SAMN05421821_102603 | SAMN05421821_10117 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplM | rplU | SAMN05421821_102603 | SAMN05421821_104309 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rpmA | SAMN05421821_102603 | SAMN05421821_104308 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
| rplM | rpmF | SAMN05421821_102603 | SAMN05421821_106153 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplM | rpmI | SAMN05421821_102603 | SAMN05421821_10118 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Large subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| rplM | rpsB | SAMN05421821_102603 | SAMN05421821_102605 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rplM | rpsF | SAMN05421821_102603 | SAMN05421821_11944 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplM | rpsT | SAMN05421821_102603 | SAMN05421821_109168 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.999 |
| rplM | rpsU | SAMN05421821_102603 | SAMN05421821_109185 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.999 |
page 1 of 6