SEQ02369.1 protein (Amphritea atlantica) - STRING interaction network

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SEQ02369.1

ATPase components of ABC transporters with duplicated ATPase domains. (534 aa)

Predicted Functional Partners:

rpmI

0.861

rplD

0.858

rplU

0.856

rpsO

0.851

rpsC

0.850

rplM

0.850

rplT

0.848

rplC

0.848

rpsG

0.847

rpmA

0.846

Your Current Organism:

Amphritea atlantica

NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ02369.1	rplC	SAMN03080615_00059	SAMN03080615_04071	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.848
SEQ02369.1	rplD	SAMN03080615_00059	SAMN03080615_04070	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.858
SEQ02369.1	rplM	SAMN03080615_00059	SAMN03080615_04191	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.850
SEQ02369.1	rplT	SAMN03080615_00059	SAMN03080615_01996	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.848
SEQ02369.1	rplU	SAMN03080615_00059	SAMN03080615_04018	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.856
SEQ02369.1	rpmA	SAMN03080615_00059	SAMN03080615_04017	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.846
SEQ02369.1	rpmI	SAMN03080615_00059	SAMN03080615_01997	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.861
SEQ02369.1	rpsC	SAMN03080615_00059	SAMN03080615_04065	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.850
SEQ02369.1	rpsG	SAMN03080615_00059	SAMN03080615_04395	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.847
SEQ02369.1	rpsO	SAMN03080615_00059	SAMN03080615_03906	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.851
rplC	SEQ02369.1	SAMN03080615_04071	SAMN03080615_00059	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ATPase components of ABC transporters with duplicated ATPase domains.	0.848
rplC	rplD	SAMN03080615_04071	SAMN03080615_04070	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN03080615_04071	SAMN03080615_04191	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplC	rplT	SAMN03080615_04071	SAMN03080615_01996	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplC	rplU	SAMN03080615_04071	SAMN03080615_04018	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplC	rpmA	SAMN03080615_04071	SAMN03080615_04017	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.994
rplC	rpmI	SAMN03080615_04071	SAMN03080615_01997	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.	0.989
rplC	rpsC	SAMN03080615_04071	SAMN03080615_04065	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsG	SAMN03080615_04071	SAMN03080615_04395	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.994
rplC	rpsO	SAMN03080615_04071	SAMN03080615_03906	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993

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