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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ02610.1Transcriptional regulator, IclR family. (256 aa)    
Predicted Functional Partners:
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.880
SER20227.1
Urea carboxylase.
  
 
  0.831
SEQ01088.1
Transcriptional regulator, IclR family.
  
     0.668
SEQ86422.1
Phosphate butyryltransferase.
    
 0.595
SEQ11644.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.564
SEQ78910.1
Transcriptional regulator, IclR family.
  
     0.545
SEQ02663.1
D-3-hydroxyaspartate aldolase.
 
     0.510
SEQ11668.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.506
SEQ02643.1
Threonine dehydratase.
 
     0.478
SEQ11707.1
Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family.
  
    0.443
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.