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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ03951.1ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC. (254 aa)    
Predicted Functional Partners:
SEQ03904.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 0.999
SEQ03932.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 0.999
SEQ03975.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
 0.998
SEQ03998.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 0.998
SEQ74071.1
acyl-CoA thioesterase.
 
 
 0.966
SEQ03888.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.962
SEQ74109.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
 
 0.940
SEQ80399.1
Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.838
SEQ05772.1
Ferredoxin-NADP reductase.
 
 0.787
SEQ69202.1
Transcriptional regulator, PaaX family.
 
  
 0.774
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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