STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ04198.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (339 aa)    
Predicted Functional Partners:
SEQ04222.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.950
SEQ04246.1
TRAP transporter, DctM subunit.
 
    0.934
SEQ79369.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.812
SEQ80471.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.806
SER22042.1
Tripartite ATP-independent transporter, DctQ component.
  
    0.802
SEQ69234.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.801
SEQ97824.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.798
SER22062.1
TRAP transporter, DctM subunit.
  
    0.749
SEQ69255.1
TRAP transporter, DctM subunit.
  
    0.745
SEQ79353.1
TRAP transporter, DctM subunit.
  
    0.745
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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