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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ04811.1Quinohemoprotein amine dehydrogenase, beta subunit. (380 aa)    
Predicted Functional Partners:
SEQ04781.1
Quinohemoprotein amine dehydrogenase, gamma subunit.
   
   0.952
SEQ04731.1
Quinohemoprotein amine dehydrogenase.
  
 0.932
SEQ04488.1
Quinohemoprotein amine dehydrogenase.
  
 0.869
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 
 0.856
SEQ04538.1
Quinohemoprotein amine dehydrogenase, gamma subunit.
   
   0.839
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.796
SEQ76507.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.764
SEQ58707.1
Cytochrome c peroxidase.
  
 
 0.758
SER19558.1
Cytochrome c peroxidase.
  
 
 0.758
SEQ04764.1
Uncharacterized protein.
       0.736
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.