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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betITranscriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. (193 aa)    
Predicted Functional Partners:
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 0.905
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 0.774
SEQ05062.1
Glycine betaine/proline transport system substrate-binding protein.
 
     0.764
SEQ04947.1
Hypothetical protein.
  
 
  0.556
SEQ79709.1
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.499
SEQ04717.1
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.490
SEQ05015.1
Glycine betaine/proline transport system ATP-binding protein.
 
   
 0.475
SEQ04445.1
PAS domain S-box-containing protein.
    
 
 0.432
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
      
 0.424
SEQ79136.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.424
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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