STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ05133.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (348 aa)    
Predicted Functional Partners:
SEQ08511.1
Transcriptional regulator, AraC family.
  
   0.755
SEQ50589.1
Transcriptional regulator, AraC family.
  
   0.711
SER02615.1
Helix-turn-helix domain-containing protein.
  
   0.698
SEQ05418.1
Sarcosine oxidase subunit gamma.
 
    0.634
SEQ05373.1
Sarcosine oxidase subunit delta.
 
     0.628
SEQ05395.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.622
SEQ01232.1
AraC-type DNA-binding protein.
  
   0.603
SEQ66983.1
AraC-type DNA-binding protein.
  
   0.592
SEQ73822.1
Transcriptional regulator, AraC family.
 
   0.574
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.514
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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