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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ05199.1Creatinase. (403 aa)    
Predicted Functional Partners:
SEQ05242.1
Creatinine amidohydrolase.
 
  
  0.947
SEQ05418.1
Sarcosine oxidase subunit gamma.
  
  
  0.867
SEQ05373.1
Sarcosine oxidase subunit delta.
  
  
  0.861
SEQ05395.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.853
SEQ36003.1
Hypothetical protein.
    
 0.824
SEQ43073.1
Ectoine hydroxylase.
    
 0.811
SEQ13285.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.779
SEQ05358.1
Sarcosine oxidase subunit beta.
 
 
  0.747
SEQ13246.1
N-methylglutamate dehydrogenase subunit A precursor.
 
 
  0.664
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.623
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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