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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ05481.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (376 aa)    
Predicted Functional Partners:
SEQ05395.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
     0.752
SEQ05373.1
Sarcosine oxidase subunit delta.
 
     0.747
SEQ05418.1
Sarcosine oxidase subunit gamma.
 
    0.746
SEQ01910.1
Helix-turn-helix domain-containing protein.
  
   0.733
SEQ08511.1
Transcriptional regulator, AraC family.
  
   0.690
SEQ05358.1
Sarcosine oxidase subunit beta.
 
     0.612
SER02615.1
Helix-turn-helix domain-containing protein.
  
   0.600
SER04553.1
Transcriptional regulator, AraC family.
 
   0.528
SEQ01232.1
AraC-type DNA-binding protein.
  
   0.525
SEQ23625.1
AraC-like ligand binding domain-containing protein.
 
 
 0.518
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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