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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ05911.1TRAP-type C4-dicarboxylate transport system, small permease component. (178 aa)    
Predicted Functional Partners:
SEQ05890.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.911
SEQ05932.1
TRAP transporter, DctM subunit.
 
  0.887
SEQ53365.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.664
SEQ08207.1
Tripartite ATP-independent transporter, DctQ component.
  
     0.599
SEQ08181.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.581
SEQ81880.1
Helix-turn-helix domain-containing protein.
  
     0.579
SER22042.1
Tripartite ATP-independent transporter, DctQ component.
  
     0.548
SEQ69234.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.536
SEQ53344.1
TRAP transporter, DctM subunit.
 
  0.533
SEQ59036.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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