close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ07336.1Protein CcmA, bactofilin family. (153 aa)    
Predicted Functional Partners:
SEQ07312.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.895
SEQ07352.1
Glutamine amidotransferase.
       0.775
SEQ07366.1
ATP-dependent helicase HrpA.
       0.664
SEQ69058.1
Replication region DNA-binding N-term.
 
     0.555
SER07985.1
Flagellar protein FliS.
    
 
 0.531
SEQ42784.1
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
    
   0.519
SER07539.1
Flagellar motor switch protein FliN/FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
   0.519
SEQ87339.1
Hypothetical protein.
  
     0.507
SEQ07306.1
TIGR00266 family protein.
       0.498
SEQ84358.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.495
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.