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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ07470.1Transcriptional regulator, GntR family. (235 aa)    
Predicted Functional Partners:
SEQ13932.1
Transcriptional regulator, GntR family.
  
     0.742
SEQ58626.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
  
 0.662
SEQ07424.1
Transcriptional regulator, LuxR family.
 
    0.659
SEQ36109.1
GntR family transcriptional regulator, vanillate catabolism transcriptional regulator.
  
     0.620
SEQ70194.1
DNA-binding transcriptional regulator, GntR family.
  
     0.599
SEQ07493.1
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
     0.594
SEQ07452.1
Putrescine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.550
SER15165.1
Transcriptional regulator, GntR family.
  
  
 0.535
SEQ61229.1
Transcriptional regulator, GntR family.
  
  
 0.516
SEQ13630.1
Transcriptional regulator, GntR family.
  
  
 0.489
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.