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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ08381.1FecR family protein. (557 aa)    
Predicted Functional Partners:
SEQ08351.1
Tetratricopeptide repeat-containing protein.
 
     0.948
SEQ08418.1
Adenylate cyclase.
 
     0.829
SEQ08398.1
Beta-lactamase superfamily domain-containing protein.
 
     0.735
SEQ08456.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
 
     0.722
SEQ86271.1
Murein L,D-transpeptidase YafK.
  
   
 0.653
SEQ39972.1
Phosphoribosyl-ATP pyrophosphohydrolase.
  
     0.546
SEQ86022.1
NlpE N-terminal domain-containing protein.
 
  
  0.489
SEQ30879.1
4Fe-4S binding domain-containing protein.
  
     0.483
SEQ86259.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
    0.482
SEQ98809.1
Conserved hypothetical protein.
  
     0.480
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.