Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEQ09748.1Ammonium transporter (TC 1.A.11). (417 aa)    
Predicted Functional Partners:
SEQ26465.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
 0.990
SEQ26509.1
Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family.
 0.990
SEQ09729.1
Nitrogen regulatory protein P-II family.
 0.982
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
 
  
 0.827
SEQ26320.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
      0.817
SEQ59923.1
Hypothetical protein.
  
 0.751
SEQ84764.1
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL.
  
 
 0.656
SEQ90228.1
Signal transduction histidine kinase.
 
  
  0.591
SEQ79471.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
      0.584
SEQ90488.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
  
  0.579
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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