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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ09770.1Putative proteasome-type protease. (237 aa)    
Predicted Functional Partners:
SER18534.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
  
 0.815
SER18519.1
Uncharacterized conserved protein, Alpha-E superfamily.
 
    0.798
SEQ26910.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
  
 0.777
SEQ26951.1
Transglutaminase-like enzyme, putative cysteine protease.
 
    0.628
SEQ26923.1
Transglutaminase-like enzyme, putative cysteine protease.
 
    0.514
SEQ09796.1
Predicted Fe-Mo cluster-binding protein, NifX family.
       0.440
SEQ09748.1
Ammonium transporter (TC 1.A.11).
       0.415
SEQ09729.1
Nitrogen regulatory protein P-II family.
       0.410
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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