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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ11707.1Uncharacterized protein YcsI, UPF0317 family; Belongs to the D-glutamate cyclase family. (262 aa)    
Predicted Functional Partners:
SEQ11668.1
Sensor histidine kinase inhibitor, KipI family.
 
    0.966
SEQ11644.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
    0.961
SEQ11680.1
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    0.954
SEQ11626.1
Protein of unknown function.
 
     0.888
SER20227.1
Urea carboxylase.
 
    0.839
SEQ81455.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.593
SEQ01088.1
Transcriptional regulator, IclR family.
  
    0.443
SEQ02610.1
Transcriptional regulator, IclR family.
  
    0.443
SEQ39813.1
Transcriptional regulator, IclR family.
  
    0.443
SEQ78910.1
Transcriptional regulator, IclR family.
  
    0.443
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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