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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ12008.1Lipid-binding SYLF domain-containing protein. (179 aa)    
Predicted Functional Partners:
SEQ59444.1
Mevalonate kinase.
    
   0.822
SEQ59462.1
Mevalonate kinase.
    
   0.822
SEQ59482.1
hydroxymethylglutaryl-CoA synthase.
    
   0.822
SEQ12030.1
Hypothetical protein.
       0.741
SEQ12050.1
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.736
SER00765.1
Hypothetical protein.
  
    0.576
SEQ11984.1
Hypothetical protein.
       0.519
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.508
SEQ95436.1
Capsular polysaccharide transport system permease protein.
   
    0.493
SEQ95457.1
Capsular polysaccharide transport system ATP-binding protein.
   
    0.491
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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