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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ13331.12-keto-4-pentenoate hydratase. (264 aa)    
Predicted Functional Partners:
SEQ13364.1
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family.
       0.639
SEQ10648.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.570
SEQ10714.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
 
 0.558
SEQ62204.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.509
SER22566.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.504
SEQ47715.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.480
SEQ13261.1
N-methylglutamate dehydrogenase subunit B.
       0.468
SEQ13285.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
       0.468
SEQ13296.1
Sarcosine oxidase subunit gamma; Belongs to the GcvT family.
       0.468
SEQ13246.1
N-methylglutamate dehydrogenase subunit A precursor.
  
    0.461
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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