Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEQ13410.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (826 aa)    
Predicted Functional Partners:
SEQ81859.1
Response regulator receiver domain-containing protein.
 
 0.999
SEQ04445.1
PAS domain S-box-containing protein.
  
 0.996
SEQ90228.1
Signal transduction histidine kinase.
 0.995
SEQ14632.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.993
SER07807.1
PAS domain S-box-containing protein.
  
 0.993
SEQ13387.1
PAS domain S-box-containing protein.
 
 0.991
SEQ26320.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.991
SEQ85500.1
PAS domain S-box-containing protein.
  
 0.991
SEQ89399.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.991
SER02541.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.991
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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