STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ23291.1ATP-binding cassette, subfamily C, CydD. (578 aa)    
Predicted Functional Partners:
SEQ23274.1
ATP-binding cassette, subfamily C, CydC.
 
 
0.996
SEQ23358.1
Cytochrome d ubiquinol oxidase subunit I.
  
 0.975
SEQ23333.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
 
  
 0.970
pstB
Phosphate ABC transporter ATP-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.871
SEQ91465.1
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-).
 
     
0.779
SEQ82325.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.733
SEQ25296.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
    
0.636
SEQ50741.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
     
0.556
SER02085.1
Amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-).
 
    
0.551
SEQ23317.1
Sigma54 specific transcriptional regulator, Fis family.
       0.546
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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