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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ23443.1Hypothetical protein. (341 aa)    
Predicted Functional Partners:
SEQ98771.1
Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.985
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 0.950
SEQ95078.1
Acyl transferase domain-containing protein.
    
 0.919
SEQ23464.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.856
SEQ11968.1
Uncharacterized conserved protein YcbX, contains MOSC and Fe-S domains.
  
 
 0.614
SEQ03998.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.575
SEQ04185.1
Vanillate O-demethylase ferredoxin subunit.
  
 
 0.575
SEQ05772.1
Ferredoxin-NADP reductase.
  
 
 0.575
SEQ09307.1
Ferredoxin-NADP reductase.
  
 
 0.575
SEQ23206.1
Vanillate O-demethylase ferredoxin subunit.
  
 
 0.575
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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