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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ23625.1AraC-like ligand binding domain-containing protein. (260 aa)    
Predicted Functional Partners:
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.804
SEQ05950.1
Transcriptional regulator, XRE family with cupin sensor.
  
 0.719
SEQ01910.1
Helix-turn-helix domain-containing protein.
  
   0.716
SER08127.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.701
SER08161.1
Flagellar hook protein FlgE.
    
   0.701
SEQ36398.1
AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein.
 
   0.657
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.643
SEQ85054.1
Chorismate mutase.
  
 
 0.641
SER02615.1
Helix-turn-helix domain-containing protein.
  
   0.634
SEQ72858.1
AraC family transcriptional regulator, transcriptional activator of pobA.
 
   0.633
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.