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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ23886.1Transcriptional regulator, Nlp family. (94 aa)    
Predicted Functional Partners:
SEQ23940.1
Putative transposase.
 
   
 0.887
SEQ23968.1
AAA domain-containing protein.
 
     0.861
SEQ24088.1
Protein of unknown function.
 
    0.843
SEQ24010.1
Hypothetical protein.
 
     0.840
SEQ23870.1
Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains.
 
     0.767
SEQ24249.1
Mu-like prophage protein gp16.
 
     0.766
SEQ24536.1
Phage Mu protein F like protein.
 
     0.736
SEQ24475.1
Mu-like prophage FluMu protein gp28.
 
     0.729
SEQ24507.1
Mu-like prophage protein gp29.
 
   
 0.728
SEQ24682.1
Mu-like prophage protein gp36.
  
     0.728
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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