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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ24135.1Nucleoid DNA-binding protein. (79 aa)    
Predicted Functional Partners:
SEQ24171.1
Hypothetical protein.
       0.773
SEQ24108.1
Hypothetical protein.
       0.762
SEQ23983.1
Hypothetical protein.
       0.751
SEQ24010.1
Hypothetical protein.
       0.751
SEQ24027.1
Hypothetical protein.
       0.751
SEQ24057.1
Hypothetical protein.
       0.751
SEQ24088.1
Protein of unknown function.
       0.751
SEQ23968.1
AAA domain-containing protein.
       0.711
SEQ24178.1
DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family.
       0.631
SEQ23940.1
Putative transposase.
       0.587
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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