SEQ25749.1 protein (Amphritea atlantica) - STRING interaction network

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SEQ25749.1

Uncharacterized membrane protein YgdD, TMEM256/DUF423 family. (126 aa)

Predicted Functional Partners:

SEQ25769.1

0.784

thiG

0.650

rlmM

0.598

rpoH

0.574

trmB

0.520

Your Current Organism:

Amphritea atlantica

NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEQ25749.1	SEQ25769.1	SAMN03080615_00933	SAMN03080615_00934	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	Sulfur carrier protein ThiS.	0.784
SEQ25749.1	rlmM	SAMN03080615_00933	SAMN03080615_01307	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	23S rRNA (cytidine2498-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.	0.598
SEQ25749.1	rpoH	SAMN03080615_00933	SAMN03080615_00932	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.574
SEQ25749.1	thiG	SAMN03080615_00933	SAMN03080615_00935	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	0.650
SEQ25749.1	trmB	SAMN03080615_00933	SAMN03080615_00936	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.520
SEQ25769.1	SEQ25749.1	SAMN03080615_00934	SAMN03080615_00933	Sulfur carrier protein ThiS.	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	0.784
SEQ25769.1	rpoH	SAMN03080615_00934	SAMN03080615_00932	Sulfur carrier protein ThiS.	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.529
SEQ25769.1	thiG	SAMN03080615_00934	SAMN03080615_00935	Sulfur carrier protein ThiS.	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	0.999
SEQ25769.1	trmB	SAMN03080615_00934	SAMN03080615_00936	Sulfur carrier protein ThiS.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.535
rlmM	SEQ25749.1	SAMN03080615_01307	SAMN03080615_00933	23S rRNA (cytidine2498-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	0.598
rpoH	SEQ25749.1	SAMN03080615_00932	SAMN03080615_00933	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	0.574
rpoH	SEQ25769.1	SAMN03080615_00932	SAMN03080615_00934	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	Sulfur carrier protein ThiS.	0.529
rpoH	thiG	SAMN03080615_00932	SAMN03080615_00935	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	0.423
thiG	SEQ25749.1	SAMN03080615_00935	SAMN03080615_00933	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	0.650
thiG	SEQ25769.1	SAMN03080615_00935	SAMN03080615_00934	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	Sulfur carrier protein ThiS.	0.999
thiG	rpoH	SAMN03080615_00935	SAMN03080615_00932	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.423
thiG	trmB	SAMN03080615_00935	SAMN03080615_00936	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.621
trmB	SEQ25749.1	SAMN03080615_00936	SAMN03080615_00933	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family.	0.520
trmB	SEQ25769.1	SAMN03080615_00936	SAMN03080615_00934	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Sulfur carrier protein ThiS.	0.535
trmB	thiG	SAMN03080615_00936	SAMN03080615_00935	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.	0.621

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