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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ29780.1Ribosomal protein S18 acetylase RimI. (375 aa)    
Predicted Functional Partners:
SEQ29747.1
Glutathione synthase/RimK-type ligase, ATP-grasp superfamily.
     0.942
argA
N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily.
    
 0.631
SEQ05950.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.551
SER20227.1
Urea carboxylase.
   
  0.519
SEQ29735.1
Acetylornithine aminotransferase apoenzyme.
    
 0.512
SEQ98790.1
TIGR02647 family protein.
  
     0.440
SEQ29785.1
Protein of unknown function.
       0.429
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
     
 0.427
SEQ11252.1
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain.
  
     0.410
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.