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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ30922.1Biopolymer transport protein ExbB. (203 aa)    
Predicted Functional Partners:
SEQ30946.1
Biopolymer transport protein ExbD.
 
 
 0.985
SEQ68921.1
Biopolymer transport protein ExbD.
 
 
 0.935
SEQ30960.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.915
tolR
Cell division and transport-associated protein TolR; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.880
SEQ59275.1
Biopolymer transport protein ExbD.
 
 
 0.869
SEQ30879.1
4Fe-4S binding domain-containing protein.
 
    0.811
SEQ59300.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.779
SEQ30903.1
Thiol:disulfide interchange protein DsbD.
       0.774
SEQ30850.1
Hypothetical protein.
       0.773
SEQ85326.1
Outer membrane receptor for ferrienterochelin and colicins.
 
  
 0.761
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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