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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ35686.1TRAP transporter, DctM subunit. (428 aa)    
Predicted Functional Partners:
SEQ35724.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.988
SEQ35703.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  0.854
SEQ70486.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.826
SEQ81140.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.782
SEQ36126.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.781
SEQ89868.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.779
SEQ97806.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.769
SEQ80495.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.761
SEQ35667.1
Hemerythrin-like metal-binding domain protein.
       0.757
SEQ81204.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.754
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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