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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ36419.1NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. (309 aa)    
Predicted Functional Partners:
SEQ36378.1
Acyl-CoA dehydrogenase.
 
  
  0.812
SEQ87096.1
Dehydrogenase (flavoprotein).
   
 0.792
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
    
 0.787
SEQ27771.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
  0.603
SEQ39591.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
 
  0.603
SER22160.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
  0.603
SER08694.1
Catechol 2,3 dioxygenase.
  
 
  0.565
SEQ01163.1
3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9, 17-dione monooxygenase.
 
  
  0.549
SEQ01135.1
Flavin reductase (NADH).
  
  
 
0.544
SEQ01930.1
Luciferase family oxidoreductase, group 1.
 
 
 0.509
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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