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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ36724.12,4-dienoyl-CoA reductase. (400 aa)    
Predicted Functional Partners:
SEQ53505.1
Putative intracellular protease/amidase.
 
    0.796
SEQ28825.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.758
SEQ60680.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.696
SER20227.1
Urea carboxylase.
    
  0.612
SEQ36753.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.527
SEQ69378.1
Iron-binding zinc finger CDGSH type.
    
  0.524
SEQ82126.1
Glutamate synthase domain 2; Belongs to the glutamate synthase family.
    
  0.524
SEQ05684.1
Electron transfer flavoprotein beta subunit.
 
 
 
 0.494
SEQ95078.1
Acyl transferase domain-containing protein.
 
 
 0.457
SEQ05662.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 
 
 0.448
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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