close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ37192.1poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. (310 aa)    
Predicted Functional Partners:
SEQ37209.1
Polyhydroxyalkanoate synthase.
 
  
 0.982
SEQ69058.1
Replication region DNA-binding N-term.
 
     0.757
SEQ67957.1
Beta-barrel assembly machine subunit BamC.
  
     0.755
SEQ53828.1
Hypothetical protein.
  
     0.753
SEQ53868.1
P-loop containing region of AAA domain-containing protein.
  
     0.742
SEQ75305.1
Replication region DNA-binding N-term.
  
     0.710
SER05222.1
HD-like signal output (HDOD) domain, no enzymatic activity.
  
     0.699
SEQ84358.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.651
SEQ39192.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.645
SEQ37166.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.608
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.