STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ38169.1Polyhydroxyalkanoate synthase. (580 aa)    
Predicted Functional Partners:
SEQ86422.1
Phosphate butyryltransferase.
 
 0.867
SEQ99392.1
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
 0.807
SEQ40289.1
3-hydroxybutyryl-CoA dehydratase.
 
  
 0.806
SEQ37423.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.795
SEQ88748.1
Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.748
SER05301.1
NTE family protein.
 
   
 0.681
SER03975.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
   
 0.638
SEQ80366.1
3-hydroxyacyl-CoA dehydrogenase.
     
 0.616
SEQ37209.1
Polyhydroxyalkanoate synthase.
  
  
 
0.612
SEQ38197.1
Multidrug resistance protein, MATE family.
       0.551
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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