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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ39034.1Outer membrane lipoprotein-sorting protein. (268 aa)    
Predicted Functional Partners:
SEQ39044.1
Hypothetical protein.
   
 0.969
SEQ38999.1
Hypothetical protein.
 
     0.924
SEQ08592.1
Hypothetical protein.
   
 0.770
SEQ08646.1
Hypothetical protein.
 
     0.670
SER05376.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.615
SEQ39052.1
DNA-binding transcriptional regulator, ArsR family.
       0.533
SEQ23493.1
Putative ABC transport system ATP-binding protein.
   
 
 0.525
SEQ68844.1
Lipoprotein-releasing system permease protein.
   
 
 0.502
SEQ43339.1
Putative ABC transport system ATP-binding protein.
   
 
 0.499
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
   
 
 0.499
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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