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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ39427.1Protocatechuate 4,5-dioxygenase, alpha chain. (134 aa)    
Predicted Functional Partners:
SEQ39457.1
Protocatechuate 4,5-dioxygenase beta subunit.
 
 0.999
SEQ36438.1
Protocatechuate 4,5-dioxygenase beta subunit.
 
 0.997
SEQ97644.1
Protocatechuate 4,5-dioxygenase, beta chain.
 
 
 0.979
SEQ36460.1
Protocatechuate 4,5-dioxygenase alpha subunit.
 
 
0.944
SEQ35854.1
2-pyrone-4,6-dicarboxylate lactonase.
 
  
 0.941
SEQ35758.1
2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase.
 
  
 0.937
SEQ81260.1
Vanillate O-demethylase monooxygenase subunit.
 
  
  0.846
SEQ35798.1
4-oxalomesaconate hydratase.
 
  
 0.838
SEQ58070.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.815
SEQ35815.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
 
   
 0.799
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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