close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ39972.1Phosphoribosyl-ATP pyrophosphohydrolase. (187 aa)    
Predicted Functional Partners:
SEQ08351.1
Tetratricopeptide repeat-containing protein.
  
     0.678
SEQ31165.1
Iron complex outermembrane recepter protein.
  
     0.669
SEQ79996.1
Hypothetical protein.
  
     0.596
SEQ30879.1
4Fe-4S binding domain-containing protein.
  
     0.581
SEQ08381.1
FecR family protein.
  
     0.546
SEQ85383.1
Zinc carboxypeptidase.
  
     0.542
SEQ39960.1
Transcriptional regulator, GntR family.
       0.532
SEQ67852.1
CBS domain-containing protein.
  
     0.508
SEQ41462.1
Hypothetical protein.
  
     0.502
SEQ11252.1
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain.
   
    0.493
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.