Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEQ42439.1Uncharacterized membrane protein. (122 aa)    
Predicted Functional Partners:
SEQ42455.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.773
SEQ42473.1
Hypothetical protein.
 
     0.671
SEQ42493.1
Glyoxylase I family protein.
       0.513
SEQ80933.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
     0.496
SEQ42517.1
Small multidrug resistance family-3 protein.
       0.461
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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