Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SEQ43452.1Adenylate cyclase. (154 aa)    
Predicted Functional Partners:
SEQ04445.1
PAS domain S-box-containing protein.
    
  0.858
SEQ81859.1
Response regulator receiver domain-containing protein.
    
  0.858
SEQ85500.1
PAS domain S-box-containing protein.
    
  0.852
SEQ05545.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.830
srkA
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.779
SEQ08418.1
Adenylate cyclase.
     
  0.778
SER02541.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.690
SEQ75621.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.689
SEQ90228.1
Signal transduction histidine kinase.
    
  0.685
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.681
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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