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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ43452.1Adenylate cyclase. (154 aa)    
Predicted Functional Partners:
SEQ04445.1
PAS domain S-box-containing protein.
    
  0.882
SEQ85500.1
PAS domain S-box-containing protein.
    
  0.872
SEQ81859.1
Response regulator receiver domain-containing protein.
    
  0.861
srkA
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.777
SEQ05545.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.769
SEQ90228.1
Signal transduction histidine kinase.
    
  0.762
SER02541.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.745
SEQ13387.1
PAS domain S-box-containing protein.
    
  0.744
SEQ90488.1
Two-component system, NarL family, sensor histidine kinase BarA.
    
  0.744
SER07807.1
PAS domain S-box-containing protein.
    
  0.742
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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