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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ43530.1Pimeloyl-ACP methyl ester carboxylesterase. (283 aa)    
Predicted Functional Partners:
SEQ79821.1
Outer membrane autotransporter barrel domain-containing protein.
 
     0.693
SEQ95618.1
Glycosyltransferase, GT2 family.
   
 
 0.685
SEQ95196.1
Hypothetical protein.
   
 
 0.684
SEQ95345.1
Glycosyltransferase involved in cell wall bisynthesis.
   
 
 0.684
SER01875.1
Glycosyltransferase involved in cell wall bisynthesis.
   
 
 0.684
SER06723.1
Glycosyltransferase involved in cell wall bisynthesis.
   
 
 0.684
SER14981.1
Glycosyltransferase involved in cell wall bisynthesis.
   
 
 0.684
SER04157.1
Phospholipase/carboxylesterase.
     
 0.486
SER04655.1
Phospholipase/carboxylesterase.
     
 0.486
SEQ43550.1
Hypothetical protein.
       0.471
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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