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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ47201.1Leucine rich repeat variant. (249 aa)    
Predicted Functional Partners:
SEQ47181.1
Hypothetical protein.
 
     0.945
SEQ47162.1
Nitrogen fixation protein NifX.
 
    0.940
SEQ47130.1
Nitrogen fixation protein NifT.
 
    0.932
SEQ47267.1
Nitrogen fixation protein NifX.
 
     0.852
SEQ47294.1
Probable nitrogen fixation protein.
 
    0.841
SEQ47336.1
Ferredoxin III, nif-specific.
 
    0.823
SEQ47047.1
SIR2-like domain-containing protein.
 
    0.808
SEQ47248.1
Nitrogenase molybdenum-iron protein NifN; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.799
SER00904.1
Hypothetical protein.
 
     0.798
SEQ47113.1
Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
     0.797
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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