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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ47715.15-carboxymethyl-2-hydroxymuconate isomerase. (113 aa)    
Predicted Functional Partners:
SEQ10666.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
  
 
 0.750
SER22566.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.735
SEQ62204.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.723
SEQ10679.1
5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG2 subunit.
  
 
 0.687
SEQ12149.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
 
 0.687
SEQ47686.1
Hypothetical protein.
       0.645
SEQ10648.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.626
SEQ47733.1
Protein of unknown function.
       0.610
SEQ36398.1
AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein.
  
    0.499
SEQ01068.1
2-keto-4-pentenoate hydratase.
  
 
 0.489
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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