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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ48936.1Phage portal protein, lambda family. (530 aa)    
Predicted Functional Partners:
SEQ48897.1
Phage terminase, large subunit GpA.
  
 0.959
SEQ48972.1
Protein C. Serine peptidase. MEROPS family S49.
 
    0.907
SEQ49020.1
Phage major capsid protein E.
 
    0.902
SEQ48911.1
gpW protein.
  
    0.790
SEQ48875.1
Hypothetical protein.
  
    0.770
SEQ90292.1
Predicted arabinose efflux permease, MFS family.
  
     0.580
SEQ48950.1
Hypothetical protein.
       0.568
SEQ90243.1
ABC-type uncharacterized transport system, substrate-binding protein.
  
     0.535
SEQ05564.1
Zn-dependent protease with chaperone function.
  
     0.529
SEQ48988.1
Bacteriophage lambda head decoration protein D.
     
 0.518
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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