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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ50224.1Two-component system, OmpR family, response regulator. (245 aa)    
Predicted Functional Partners:
SEQ04445.1
PAS domain S-box-containing protein.
 
 0.989
SEQ85500.1
PAS domain S-box-containing protein.
 
0.977
SEQ90228.1
Signal transduction histidine kinase.
0.976
SEQ81859.1
Response regulator receiver domain-containing protein.
  
 0.975
SEQ13387.1
PAS domain S-box-containing protein.
 
 0.972
SEQ90488.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.972
SEQ10415.1
PAS domain S-box-containing protein.
 0.966
SER07807.1
PAS domain S-box-containing protein.
  
 0.952
SEQ50496.1
Signal transduction histidine kinase.
 0.945
SEQ50240.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.938
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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