STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ51293.1General secretion pathway protein D. (704 aa)    
Predicted Functional Partners:
SEQ51349.1
General secretion pathway protein L.
 
   
 0.954
SEQ51331.1
General secretion pathway protein M.
 
     0.946
SEQ51676.1
General secretion pathway protein G.
 
  
 0.886
SEQ51610.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.863
SEQ51589.1
Type II secretion system (T2SS), protein K.
 
   
 0.854
SEQ51314.1
Hypothetical protein.
     
 0.816
SEQ51637.1
General secretion pathway protein I.
 
  
 0.816
SEQ51722.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.799
SEQ51695.1
General secretion pathway protein F.
 
  
 0.786
SER07539.1
Flagellar motor switch protein FliN/FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.690
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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