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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ51349.1General secretion pathway protein L. (369 aa)    
Predicted Functional Partners:
SEQ28652.1
Type IV pilus assembly protein PilM.
  
 0.958
SEQ51331.1
General secretion pathway protein M.
 
   
 0.955
SEQ51293.1
General secretion pathway protein D.
 
   
 0.954
SEQ28691.1
Type IV pilus assembly protein PilO.
  
 
 0.915
SEQ28713.1
Type IV pilus assembly protein PilP.
  
 
 0.914
SEQ28741.1
Type IV pilus assembly protein PilQ.
  
 
 0.884
SEQ51722.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 
 0.846
SEQ51637.1
General secretion pathway protein I.
 
  
 0.815
SEQ51589.1
Type II secretion system (T2SS), protein K.
 
   
 0.800
SEQ51610.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
   
 0.799
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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