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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ51909.1General secretion pathway protein A. (641 aa)    
Predicted Functional Partners:
SEQ51889.1
Type II secretion system protein B.
 
     0.938
SEQ51944.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
       0.524
SER08202.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.519
SEQ51962.1
Uncharacterized conserved protein YbgA, DUF1722 family.
       0.517
SEQ51589.1
Type II secretion system (T2SS), protein K.
 
     0.477
SER14599.1
Uncharacterized protein, PEP-CTERM system associated.
 
     0.476
SER14631.1
Capsular exopolysaccharide family.
 
     0.463
SEQ51293.1
General secretion pathway protein D.
 
  
 0.451
SER14615.1
Polysaccharide export outer membrane protein.
 
     0.440
SEQ25249.1
Porphobilinogen synthase; Belongs to the ALAD family.
     
 0.428
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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