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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ52445.1GntR family transcriptional regulator / MocR family aminotransferase. (496 aa)    
Predicted Functional Partners:
SEQ85054.1
Chorismate mutase.
    
 0.772
SEQ52466.1
Nitroimidazol reductase NimA, pyridoxamine 5'-phosphate oxidase superfamily.
 
    0.755
SEQ01015.1
4-hydroxy-2-oxovalerate aldolase.
  
 
 0.729
SEQ80628.1
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.
  
  
 
0.510
SEQ42074.1
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.
  
  
 
0.509
SEQ73808.1
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain.
  
  
 
0.486
SEQ66983.1
AraC-type DNA-binding protein.
  
     0.458
SEQ61283.1
Dinuclear metal center protein, YbgI/SA1388 family.
   
    0.426
SEQ52483.1
Sel1 repeat-containing protein.
       0.419
SEQ09947.1
Amino acid exporter, AAE family.
 
  
 0.402
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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