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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ52643.1Formate dehydrogenase subunit delta. (75 aa)    
Predicted Functional Partners:
SEQ52692.1
Formate dehydrogenase major subunit.
  
 0.995
SEQ50934.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
   
 0.993
SEQ52736.1
Formate dehydrogenase gamma subunit.
   
 0.992
SEQ52723.1
Formate dehydrogenase iron-sulfur subunit.
   
 0.990
fdhD
FdhD protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.841
SEQ05826.1
Glutathione-independent formaldehyde dehydrogenase.
    
 0.789
SEQ90142.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.771
mqo
Malate dehydrogenase (quinone).
     
 0.745
SEQ52755.1
ModE molybdate transport repressor domain-containing protein.
       0.651
SEQ67970.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.500
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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