Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEQ53807.1Ribosomal protein S12 methylthiotransferase accessory factor. (576 aa)    
Predicted Functional Partners:
SEQ57783.1
Nitroreductase.
  
  
 0.544
SEQ60215.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.524
SEQ85902.1
Nitroreductase.
  
  
 0.524
SEQ01305.1
ABC-2 type transport system permease protein.
  
  
 0.449
SEQ14656.1
ABC-2 type transport system permease protein.
  
  
 0.449
SEQ57073.1
ABC-2 type transport system permease protein.
  
  
 0.449
SEQ57844.1
ABC-2 type transport system permease protein.
  
  
 0.449
SER02728.1
ABC-2 type transport system permease protein.
  
  
 0.449
SEQ53828.1
Hypothetical protein.
       0.407
SEQ53851.1
Protein of unknown function.
       0.407
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.