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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ53906.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SEQ68804.1
DNA replication terminus site binding protein.
  
     0.590
SEQ53893.1
Hypothetical protein.
       0.556
SEQ53954.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
       0.540
SEQ25467.1
Hypothetical protein.
  
     0.536
SEQ53935.1
Uncharacterized membrane-anchored protein.
       0.533
SEQ86703.1
Acyl-CoA thioesterase FadM.
  
     0.474
SEQ41462.1
Hypothetical protein.
  
     0.465
SEQ96306.1
3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.441
SEQ98980.1
Sel1 repeat-containing protein.
  
     0.431
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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